Quality Control of the input data frame (for internal use only)

Quality Control of the input data frame (for internal use only)

Usage

make_QCed_df(DATA, XCI_ref, SNP_DETECTION_DP = 30, SNP_DETECTION_MAF = 0.1)

Arguments

DATA

Input scASE data frame

XCI_ref

XCI status reference data

SNP_DETECTION_DP

Threshold for read depth

SNP_DETECTION_MAF

Threshold for minor allele frequency