Test single-cell allele-specific chromatin accessibility data for scLinaX-multi.

Test single-cell allele-specific chromatin accessibility data for scLinaX-multi. This data was generated from 10X multiome data using cellsnp-lite and annovar.

Usage

multiome_ATAC_ASE_data

Format

multiome_ATAC_ASE_data

A dataframe (tibble) containing single-cell allele-specific chromatin accessibility data for 10X multiome data

SNP_ID

SNP identifier

POS

Genomic position of the SNP (GRCh38)

REF,ALT,OTH

Allelic expression of the reference/alterntive/other allele

Sample_ID

Sample_ID

...

Source

https://www.10xgenomics.com/resources/datasets/pbmc-from-a-healthy-donor-granulocytes-removed-through-cell-sorting-10-k-1-standard-2-0-0